Fix for #3164

- `network.clustering.cluster()` now handles all nodes, not just the visible ones
- Changing ivisibility of nodes now explicitly takes clustering into account, see `Network._updateVisibleIndices()`
- `network.clustering` does not change `hidden` status any more.

The important part of this PR is the realization that 'hidden' and 'clustered' are two distinct things and should be handled separately.
In particular, clustering should **not** change the `hidden` state in any way.

* clusters in hierarchical working for sortorder 'hubsize'

* Code cleanup

* replacing all ES6 imports with CJS require calls
resolves #2934
used the following regex to apply the changes in lib:
s/import\s+(\w+)\s+from\s+(.*);\s*$/var $1 = require($2).default;/
s/import\s+(\w+)\s+from\s+(.*)\s*$/var $1 = require($2).default;/

* cleaning up inconsistencies

added example. Improved handling of options for hierarchical view.

- Fixed #1528, #1278, avoided ID's being cast to string for methods that return ID's as well as storePositions casting to string.

Missed "apply" call on DOMtoCanvas call

- Added beginnings of unit testing for network.