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587 lines
18 KiB
587 lines
18 KiB
let util = require("../../util");
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import Cluster from './components/nodes/Cluster'
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class ClusterEngine {
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constructor(body) {
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this.body = body;
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this.clusteredNodes = {};
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this.options = {};
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this.defaultOptions = {};
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util.extend(this.options, this.defaultOptions);
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}
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setOptions(options) {
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if (options !== undefined) {
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}
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}
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/**
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*
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* @param hubsize
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* @param options
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*/
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clusterByHubsize(hubsize, options) {
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if (hubsize === undefined) {
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hubsize = this._getHubSize();
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}
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else if (tyepof(hubsize) === "object") {
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options = this._checkOptions(hubsize);
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hubsize = this._getHubSize();
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}
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let nodesToCluster = [];
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for (let i = 0; i < this.body.nodeIndices.length; i++) {
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let node = this.body.nodes[this.body.nodeIndices[i]];
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if (node.edges.length >= hubsize) {
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nodesToCluster.push(node.id);
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}
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}
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for (let i = 0; i < nodesToCluster.length; i++) {
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let node = this.body.nodes[nodesToCluster[i]];
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this.clusterByConnection(node,options,false);
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}
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this.body.emitter.emit('_dataChanged');
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}
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/**
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* loop over all nodes, check if they adhere to the condition and cluster if needed.
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* @param options
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* @param refreshData
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*/
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cluster(options = {}, refreshData = true) {
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if (options.joinCondition === undefined) {throw new Error("Cannot call clusterByNodeData without a joinCondition function in the options.");}
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// check if the options object is fine, append if needed
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options = this._checkOptions(options);
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let childNodesObj = {};
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let childEdgesObj = {}
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// collect the nodes that will be in the cluster
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for (let i = 0; i < this.body.nodeIndices.length; i++) {
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let nodeId = this.body.nodeIndices[i];
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let clonedOptions = this._cloneOptions(nodeId);
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if (options.joinCondition(clonedOptions) === true) {
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childNodesObj[nodeId] = this.body.nodes[nodeId];
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}
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}
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this._cluster(childNodesObj, childEdgesObj, options, refreshData);
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}
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/**
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* Cluster all nodes in the network that have only 1 edge
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* @param options
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* @param refreshData
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*/
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clusterOutliers(options, refreshData = true) {
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options = this._checkOptions(options);
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let clusters = [];
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// collect the nodes that will be in the cluster
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for (let i = 0; i < this.body.nodeIndices.length; i++) {
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let childNodesObj = {};
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let childEdgesObj = {};
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let nodeId = this.body.nodeIndices[i];
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if (this.body.nodes[nodeId].edges.length === 1) {
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let edge = this.body.nodes[nodeId].edges[0];
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let childNodeId = this._getConnectedId(edge, nodeId);
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if (childNodeId != nodeId) {
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if (options.joinCondition === undefined) {
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childNodesObj[nodeId] = this.body.nodes[nodeId];
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childNodesObj[childNodeId] = this.body.nodes[childNodeId];
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}
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else {
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let clonedOptions = this._cloneOptions(nodeId);
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if (options.joinCondition(clonedOptions) === true) {
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childNodesObj[nodeId] = this.body.nodes[nodeId];
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}
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clonedOptions = this._cloneOptions(childNodeId);
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if (options.joinCondition(clonedOptions) === true) {
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childNodesObj[childNodeId] = this.body.nodes[childNodeId];
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}
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}
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clusters.push({nodes:childNodesObj, edges:childEdgesObj})
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}
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}
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}
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for (let i = 0; i < clusters.length; i++) {
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this._cluster(clusters[i].nodes, clusters[i].edges, options, false)
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}
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if (refreshData === true) {
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this.body.emitter.emit('_dataChanged');
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}
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}
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/**
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* suck all connected nodes of a node into the node.
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* @param nodeId
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* @param options
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* @param refreshData
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*/
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clusterByConnection(nodeId, options, refreshData = true) {
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// kill conditions
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if (nodeId === undefined) {throw new Error("No nodeId supplied to clusterByConnection!");}
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if (this.body.nodes[nodeId] === undefined) {throw new Error("The nodeId given to clusterByConnection does not exist!");}
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let node = this.body.nodes[nodeId];
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options = this._checkOptions(options, node);
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if (options.clusterNodeProperties.x === undefined) {options.clusterNodeProperties.x = node.x;}
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if (options.clusterNodeProperties.y === undefined) {options.clusterNodeProperties.y = node.y;}
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if (options.clusterNodeProperties.fixed === undefined) {
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options.clusterNodeProperties.fixed = {};
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options.clusterNodeProperties.fixed.x = node.options.fixed.x;
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options.clusterNodeProperties.fixed.y = node.options.fixed.y;
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}
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let childNodesObj = {};
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let childEdgesObj = {}
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let parentNodeId = node.id;
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let parentClonedOptions = this._cloneOptions(parentNodeId);
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childNodesObj[parentNodeId] = node;
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// collect the nodes that will be in the cluster
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for (let i = 0; i < node.edges.length; i++) {
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let edge = node.edges[i];
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let childNodeId = this._getConnectedId(edge, parentNodeId);
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if (childNodeId !== parentNodeId) {
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if (options.joinCondition === undefined) {
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childEdgesObj[edge.id] = edge;
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childNodesObj[childNodeId] = this.body.nodes[childNodeId];
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}
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else {
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// clone the options and insert some additional parameters that could be interesting.
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let childClonedOptions = this._cloneOptions(childNodeId);
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if (options.joinCondition(parentClonedOptions, childClonedOptions) === true) {
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childEdgesObj[edge.id] = edge;
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childNodesObj[childNodeId] = this.body.nodes[childNodeId];
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}
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}
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}
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else {
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childEdgesObj[edge.id] = edge;
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}
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}
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this._cluster(childNodesObj, childEdgesObj, options, refreshData);
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}
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/**
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* This returns a clone of the options or options of the edge or node to be used for construction of new edges or check functions for new nodes.
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* @param objId
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* @param type
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* @returns {{}}
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* @private
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*/
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_cloneOptions(objId, type) {
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let clonedOptions = {};
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if (type === undefined || type === 'node') {
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util.deepExtend(clonedOptions, this.body.nodes[objId].options, true);
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clonedOptions.x = this.body.nodes[objId].x;
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clonedOptions.y = this.body.nodes[objId].y;
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clonedOptions.amountOfConnections = this.body.nodes[objId].edges.length;
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}
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else {
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util.deepExtend(clonedOptions, this.body.edges[objId].options, true);
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}
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return clonedOptions;
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}
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/**
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* This function creates the edges that will be attached to the cluster.
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*
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* @param childNodesObj
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* @param childEdgesObj
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* @param newEdges
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* @param options
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* @private
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*/
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_createClusterEdges (childNodesObj, childEdgesObj, newEdges, options) {
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let edge, childNodeId, childNode;
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let childKeys = Object.keys(childNodesObj);
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for (let i = 0; i < childKeys.length; i++) {
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childNodeId = childKeys[i];
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childNode = childNodesObj[childNodeId];
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// mark all edges for removal from global and construct new edges from the cluster to others
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for (let j = 0; j < childNode.edges.length; j++) {
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edge = childNode.edges[j];
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childEdgesObj[edge.id] = edge;
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let otherNodeId = edge.toId;
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let otherOnTo = true;
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if (edge.toId != childNodeId) {
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otherNodeId = edge.toId;
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otherOnTo = true;
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}
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else if (edge.fromId != childNodeId) {
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otherNodeId = edge.fromId;
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otherOnTo = false;
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}
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if (childNodesObj[otherNodeId] === undefined) {
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let clonedOptions = this._cloneOptions(edge.id, 'edge');
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util.deepExtend(clonedOptions, options.clusterEdgeProperties);
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if (otherOnTo === true) {
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clonedOptions.from = options.clusterNodeProperties.id;
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clonedOptions.to = otherNodeId;
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}
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else {
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clonedOptions.from = otherNodeId;
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clonedOptions.to = options.clusterNodeProperties.id;
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}
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clonedOptions.id = 'clusterEdge:' + util.randomUUID();
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newEdges.push(this.body.functions.createEdge(clonedOptions))
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}
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}
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}
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}
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/**
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* This function checks the options that can be supplied to the different cluster functions
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* for certain fields and inserts defaults if needed
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* @param options
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* @returns {*}
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* @private
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*/
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_checkOptions(options = {}) {
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if (options.clusterEdgeProperties === undefined) {options.clusterEdgeProperties = {};}
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if (options.clusterNodeProperties === undefined) {options.clusterNodeProperties = {};}
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return options;
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}
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/**
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*
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* @param {Object} childNodesObj | object with node objects, id as keys, same as childNodes except it also contains a source node
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* @param {Object} childEdgesObj | object with edge objects, id as keys
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* @param {Array} options | object with {clusterNodeProperties, clusterEdgeProperties, processProperties}
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* @param {Boolean} refreshData | when true, do not wrap up
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* @private
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*/
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_cluster(childNodesObj, childEdgesObj, options, refreshData = true) {
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// kill condition: no children so cant cluster
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if (Object.keys(childNodesObj).length === 0) {return;}
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// check if we have an unique id;
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if (options.clusterNodeProperties.id === undefined) {options.clusterNodeProperties.id = 'cluster:' + util.randomUUID();}
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let clusterId = options.clusterNodeProperties.id;
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// construct the clusterNodeProperties
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let clusterNodeProperties = options.clusterNodeProperties;
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if (options.processProperties !== undefined) {
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// get the childNode options
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let childNodesOptions = [];
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for (let nodeId in childNodesObj) {
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let clonedOptions = this._cloneOptions(nodeId);
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childNodesOptions.push(clonedOptions);
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}
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// get clusterproperties based on childNodes
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let childEdgesOptions = [];
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for (let edgeId in childEdgesObj) {
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let clonedOptions = this._cloneOptions(edgeId, 'edge');
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childEdgesOptions.push(clonedOptions);
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}
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clusterNodeProperties = options.processProperties(clusterNodeProperties, childNodesOptions, childEdgesOptions);
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if (!clusterNodeProperties) {
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throw new Error("The processClusterProperties function does not return properties!");
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}
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}
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if (clusterNodeProperties.label === undefined) {
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clusterNodeProperties.label = 'cluster';
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}
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// give the clusterNode a postion if it does not have one.
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let pos = undefined;
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if (clusterNodeProperties.x === undefined) {
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pos = this._getClusterPosition(childNodesObj);
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clusterNodeProperties.x = pos.x;
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}
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if (clusterNodeProperties.y === undefined) {
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if (pos === undefined) {
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pos = this._getClusterPosition(childNodesObj);
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}
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clusterNodeProperties.y = pos.y;
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}
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// force the ID to remain the same
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clusterNodeProperties.id = clusterId;
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// create the clusterNode
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let clusterNode = this.body.functions.createNode(clusterNodeProperties, Cluster);
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clusterNode.isCluster = true;
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clusterNode.containedNodes = childNodesObj;
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clusterNode.containedEdges = childEdgesObj;
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// finally put the cluster node into global
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this.body.nodes[clusterNodeProperties.id] = clusterNode;
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// create the new edges that will connect to the cluster
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let newEdges = [];
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this._createClusterEdges(childNodesObj, childEdgesObj, newEdges, options);
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// disable the childEdges
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for (let edgeId in childEdgesObj) {
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if (childEdgesObj.hasOwnProperty(edgeId)) {
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if (this.body.edges[edgeId] !== undefined) {
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let edge = this.body.edges[edgeId];
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edge.togglePhysics(false);
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edge.options.hidden = true;
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}
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}
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}
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// disable the childNodes
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for (let nodeId in childNodesObj) {
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if (childNodesObj.hasOwnProperty(nodeId)) {
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this.clusteredNodes[nodeId] = {clusterId:clusterNodeProperties.id, node: this.body.nodes[nodeId]};
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this.body.nodes[nodeId].togglePhysics(false);
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this.body.nodes[nodeId].options.hidden = true;
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}
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}
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// push new edges to global
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for (let i = 0; i < newEdges.length; i++) {
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this.body.edges[newEdges[i].id] = newEdges[i];
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this.body.edges[newEdges[i].id].connect();
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}
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// set ID to undefined so no duplicates arise
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clusterNodeProperties.id = undefined;
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// wrap up
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if (refreshData === true) {
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this.body.emitter.emit('_dataChanged');
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}
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}
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/**
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* Check if a node is a cluster.
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* @param nodeId
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* @returns {*}
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*/
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isCluster(nodeId) {
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if (this.body.nodes[nodeId] !== undefined) {
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return this.body.nodes[nodeId].isCluster === true;
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}
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else {
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console.log("Node does not exist.")
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return false;
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}
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}
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/**
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* get the position of the cluster node based on what's inside
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* @param {object} childNodesObj | object with node objects, id as keys
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* @returns {{x: number, y: number}}
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* @private
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*/
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_getClusterPosition(childNodesObj) {
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let childKeys = Object.keys(childNodesObj);
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let minX = childNodesObj[childKeys[0]].x;
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let maxX = childNodesObj[childKeys[0]].x;
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let minY = childNodesObj[childKeys[0]].y;
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let maxY = childNodesObj[childKeys[0]].y;
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let node;
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for (let i = 0; i < childKeys.lenght; i++) {
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node = childNodesObj[childKeys[0]];
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minX = node.x < minX ? node.x : minX;
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maxX = node.x > maxX ? node.x : maxX;
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minY = node.y < minY ? node.y : minY;
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maxY = node.y > maxY ? node.y : maxY;
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}
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return {x: 0.5*(minX + maxX), y: 0.5*(minY + maxY)};
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}
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/**
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* Open a cluster by calling this function.
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* @param {String} clusterNodeId | the ID of the cluster node
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* @param {Boolean} refreshData | wrap up afterwards if not true
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*/
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openCluster(clusterNodeId, refreshData = true) {
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// kill conditions
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if (clusterNodeId === undefined) {throw new Error("No clusterNodeId supplied to openCluster.");}
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if (this.body.nodes[clusterNodeId] === undefined) {throw new Error("The clusterNodeId supplied to openCluster does not exist.");}
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if (this.body.nodes[clusterNodeId].containedNodes === undefined) {console.log("The node:" + clusterNodeId + " is not a cluster."); return};
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let clusterNode = this.body.nodes[clusterNodeId];
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let containedNodes = clusterNode.containedNodes;
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let containedEdges = clusterNode.containedEdges;
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// release nodes
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for (let nodeId in containedNodes) {
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if (containedNodes.hasOwnProperty(nodeId)) {
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let containedNode = this.body.nodes[nodeId];
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containedNode = containedNodes[nodeId];
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// inherit position
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containedNode.x = clusterNode.x;
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containedNode.y = clusterNode.y;
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// inherit speed
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containedNode.vx = clusterNode.vx;
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containedNode.vy = clusterNode.vy;
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containedNode.options.hidden = false;
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containedNode.togglePhysics(true);
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delete this.clusteredNodes[nodeId];
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}
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}
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// release edges
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for (let edgeId in containedEdges) {
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if (containedEdges.hasOwnProperty(edgeId)) {
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let edge = this.body.edges[edgeId];
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edge.options.hidden = false;
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edge.togglePhysics(true);
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}
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}
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// remove all temporary edges
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for (let i = 0; i < clusterNode.edges.length; i++) {
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let edgeId = clusterNode.edges[i].id;
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this.body.edges[edgeId].edgeType.cleanup();
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// this removes the edge from node.edges, which is why edgeIds is formed
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this.body.edges[edgeId].disconnect();
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delete this.body.edges[edgeId];
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}
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// remove clusterNode
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delete this.body.nodes[clusterNodeId];
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if (refreshData === true) {
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this.body.emitter.emit('_dataChanged');
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}
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}
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/**
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* Connect an edge that was previously contained from cluster A to cluster B if the node that it was originally connected to
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* is currently residing in cluster B
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* @param edge
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* @param nodeId
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* @param from
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* @private
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*/
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_connectEdge(edge, nodeId, from) {
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let clusterStack = this.findNode(nodeId);
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if (from === true) {
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edge.from = clusterStack[clusterStack.length - 1];
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edge.fromId = clusterStack[clusterStack.length - 1].id;
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clusterStack.pop()
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edge.fromArray = clusterStack;
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}
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else {
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edge.to = clusterStack[clusterStack.length - 1];
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edge.toId = clusterStack[clusterStack.length - 1].id;
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clusterStack.pop();
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edge.toArray = clusterStack;
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}
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edge.connect();
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}
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/**
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* Get the stack clusterId's that a certain node resides in. cluster A -> cluster B -> cluster C -> node
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* @param nodeId
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* @returns {Array}
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* @private
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*/
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findNode(nodeId) {
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let stack = [];
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let max = 100;
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let counter = 0;
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while (this.clusteredNodes[nodeId] !== undefined && counter < max) {
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stack.push(this.clusteredNodes[nodeId].node);
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nodeId = this.clusteredNodes[nodeId].clusterId;
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counter++;
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}
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stack.push(this.body.nodes[nodeId]);
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return stack;
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}
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|
|
|
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/**
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|
* Get the Id the node is connected to
|
|
* @param edge
|
|
* @param nodeId
|
|
* @returns {*}
|
|
* @private
|
|
*/
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_getConnectedId(edge, nodeId) {
|
|
if (edge.toId != nodeId) {
|
|
return edge.toId;
|
|
}
|
|
else if (edge.fromId != nodeId) {
|
|
return edge.fromId;
|
|
}
|
|
else {
|
|
return edge.fromId;
|
|
}
|
|
}
|
|
|
|
/**
|
|
* We determine how many connections denote an important hub.
|
|
* We take the mean + 2*std as the important hub size. (Assuming a normal distribution of data, ~2.2%)
|
|
*
|
|
* @private
|
|
*/
|
|
_getHubSize() {
|
|
let average = 0;
|
|
let averageSquared = 0;
|
|
let hubCounter = 0;
|
|
let largestHub = 0;
|
|
|
|
for (let i = 0; i < this.body.nodeIndices.length; i++) {
|
|
let node = this.body.nodes[this.body.nodeIndices[i]];
|
|
if (node.edges.length > largestHub) {
|
|
largestHub = node.edges.length;
|
|
}
|
|
average += node.edges.length;
|
|
averageSquared += Math.pow(node.edges.length,2);
|
|
hubCounter += 1;
|
|
}
|
|
average = average / hubCounter;
|
|
averageSquared = averageSquared / hubCounter;
|
|
|
|
let letiance = averageSquared - Math.pow(average,2);
|
|
let standardDeviation = Math.sqrt(letiance);
|
|
|
|
let hubThreshold = Math.floor(average + 2*standardDeviation);
|
|
|
|
// always have at least one to cluster
|
|
if (hubThreshold > largestHub) {
|
|
hubThreshold = largestHub;
|
|
}
|
|
|
|
return hubThreshold;
|
|
};
|
|
|
|
}
|
|
|
|
|
|
export default ClusterEngine;
|