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@ -5,7 +5,7 @@ |
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* A dynamic, browser-based visualization library. |
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* A dynamic, browser-based visualization library. |
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* |
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* |
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* @version 4.7.1-SNAPSHOT |
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* @version 4.7.1-SNAPSHOT |
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* @date 2015-08-07 |
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* @date 2015-08-12 |
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* |
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* |
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* @license |
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* @license |
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* Copyright (C) 2011-2014 Almende B.V, http://almende.com
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* Copyright (C) 2011-2014 Almende B.V, http://almende.com
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@ -139,10 +139,10 @@ return /******/ (function(modules) { // webpackBootstrap |
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// Network
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// Network
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exports.Network = __webpack_require__(59); |
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exports.Network = __webpack_require__(59); |
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exports.network = { |
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exports.network = { |
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Images: __webpack_require__(114), |
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dotparser: __webpack_require__(112), |
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gephiParser: __webpack_require__(113), |
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allOptions: __webpack_require__(110) |
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Images: __webpack_require__(116), |
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dotparser: __webpack_require__(114), |
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gephiParser: __webpack_require__(115), |
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allOptions: __webpack_require__(112) |
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}; |
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}; |
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exports.network.convertDot = function (input) { |
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exports.network.convertDot = function (input) { |
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return exports.network.dotparser.DOTToGraph(input); |
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return exports.network.dotparser.DOTToGraph(input); |
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@ -26823,7 +26823,7 @@ return /******/ (function(modules) { // webpackBootstrap |
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var _modulesLayoutEngine2 = _interopRequireDefault(_modulesLayoutEngine); |
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var _modulesLayoutEngine2 = _interopRequireDefault(_modulesLayoutEngine); |
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var _modulesManipulationSystem = __webpack_require__(109); |
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var _modulesManipulationSystem = __webpack_require__(111); |
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var _modulesManipulationSystem2 = _interopRequireDefault(_modulesManipulationSystem); |
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var _modulesManipulationSystem2 = _interopRequireDefault(_modulesManipulationSystem); |
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@ -26835,7 +26835,7 @@ return /******/ (function(modules) { // webpackBootstrap |
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var _sharedValidator2 = _interopRequireDefault(_sharedValidator); |
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var _sharedValidator2 = _interopRequireDefault(_sharedValidator); |
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var _optionsJs = __webpack_require__(110); |
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var _optionsJs = __webpack_require__(112); |
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/** |
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/** |
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* @constructor Network |
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* @constructor Network |
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@ -26848,18 +26848,18 @@ return /******/ (function(modules) { // webpackBootstrap |
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* {Array} edges |
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* {Array} edges |
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* @param {Object} options Options |
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* @param {Object} options Options |
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*/ |
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*/ |
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__webpack_require__(111); |
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__webpack_require__(113); |
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var Emitter = __webpack_require__(19); |
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var Emitter = __webpack_require__(19); |
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var Hammer = __webpack_require__(3); |
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var Hammer = __webpack_require__(3); |
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var util = __webpack_require__(7); |
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var util = __webpack_require__(7); |
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var DataSet = __webpack_require__(14); |
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var DataSet = __webpack_require__(14); |
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var DataView = __webpack_require__(16); |
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var DataView = __webpack_require__(16); |
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var dotparser = __webpack_require__(112); |
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var gephiParser = __webpack_require__(113); |
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var Images = __webpack_require__(114); |
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var dotparser = __webpack_require__(114); |
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var gephiParser = __webpack_require__(115); |
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var Images = __webpack_require__(116); |
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var Activator = __webpack_require__(40); |
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var Activator = __webpack_require__(40); |
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var locales = __webpack_require__(115); |
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var locales = __webpack_require__(117); |
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function Network(container, data, options) { |
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function Network(container, data, options) { |
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var _this = this; |
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var _this = this; |
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@ -28216,7 +28216,6 @@ return /******/ (function(modules) { // webpackBootstrap |
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if (!options) { |
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if (!options) { |
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return; |
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return; |
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} |
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} |
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// basic options
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// basic options
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if (options.id !== undefined) { |
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if (options.id !== undefined) { |
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this.id = options.id; |
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this.id = options.id; |
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@ -28290,7 +28289,6 @@ return /******/ (function(modules) { // webpackBootstrap |
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if (this.options.label === undefined || this.options.label === null) { |
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if (this.options.label === undefined || this.options.label === null) { |
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this.options.label = ''; |
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this.options.label = ''; |
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} |
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} |
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this.labelModule.setOptions(this.options, true); |
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this.labelModule.setOptions(this.options, true); |
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if (this.labelModule.baseSize !== undefined) { |
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if (this.labelModule.baseSize !== undefined) { |
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this.baseFontSize = this.labelModule.baseSize; |
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this.baseFontSize = this.labelModule.baseSize; |
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@ -38665,15 +38663,20 @@ return /******/ (function(modules) { // webpackBootstrap |
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/***/ function(module, exports, __webpack_require__) { |
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/***/ function(module, exports, __webpack_require__) { |
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'use strict'; |
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'use strict'; |
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Object.defineProperty(exports, '__esModule', { |
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Object.defineProperty(exports, '__esModule', { |
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value: true |
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value: true |
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}); |
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}); |
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var _createClass = (function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ('value' in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; })(); |
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var _createClass = (function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ('value' in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; })(); |
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function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { 'default': obj }; } |
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function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError('Cannot call a class as a function'); } } |
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function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError('Cannot call a class as a function'); } } |
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var _componentsKamadaKawaiJs = __webpack_require__(109); |
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var _componentsKamadaKawaiJs2 = _interopRequireDefault(_componentsKamadaKawaiJs); |
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var util = __webpack_require__(7); |
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var util = __webpack_require__(7); |
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var LayoutEngine = (function () { |
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var LayoutEngine = (function () { |
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@ -38857,6 +38860,10 @@ return /******/ (function(modules) { // webpackBootstrap |
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}, { |
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}, { |
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key: 'setupHierarchicalLayout', |
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key: 'setupHierarchicalLayout', |
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value: function setupHierarchicalLayout() { |
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value: function setupHierarchicalLayout() { |
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var kk = new _componentsKamadaKawaiJs2['default'](this.body, 100, 0.05); |
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kk.solve(this.body.nodeIndices, this.body.edgeIndices); |
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return; |
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if (this.options.hierarchical.enabled === true && this.body.nodeIndices.length > 0) { |
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if (this.options.hierarchical.enabled === true && this.body.nodeIndices.length > 0) { |
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// get the size of the largest hubs and check if the user has defined a level for a node.
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// get the size of the largest hubs and check if the user has defined a level for a node.
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var node = undefined, |
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var node = undefined, |
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@ -39177,6 +39184,286 @@ return /******/ (function(modules) { // webpackBootstrap |
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/***/ }, |
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/***/ }, |
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/* 109 */ |
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/* 109 */ |
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/***/ function(module, exports, __webpack_require__) { |
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/** |
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* Created by Alex on 8/7/2015. |
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*/ |
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"use strict"; |
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Object.defineProperty(exports, "__esModule", { |
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value: true |
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}); |
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var _slicedToArray = (function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; })(); |
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var _createClass = (function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; })(); |
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function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { "default": obj }; } |
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function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } |
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var _FloydWarshallJs = __webpack_require__(110); |
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var _FloydWarshallJs2 = _interopRequireDefault(_FloydWarshallJs); |
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var KamadaKawai = (function () { |
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function KamadaKawai(body, edgeLength, edgeStrength) { |
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_classCallCheck(this, KamadaKawai); |
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this.body = body; |
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this.springLength = edgeLength; |
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this.springConstant = edgeStrength; |
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this.distanceSolver = new _FloydWarshallJs2["default"](); |
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} |
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_createClass(KamadaKawai, [{ |
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key: "setOptions", |
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value: function setOptions(options) { |
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if (options) { |
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if (options.springLength) { |
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this.springLength = options.springLength; |
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} |
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if (options.springConstant) { |
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this.springConstant = options.springConstant; |
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} |
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} |
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} |
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}, { |
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key: "solve", |
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value: function solve(nodesArray, edgesArray) { |
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console.time("FLOYD - getDistances"); |
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var D_matrix = this.distanceSolver.getDistances(this.body, nodesArray, edgesArray); // distance matrix
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console.timeEnd("FLOYD - getDistances"); |
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// get the L Matrix
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this._createL_matrix(D_matrix); |
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// get the K Matrix
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this._createK_matrix(D_matrix); |
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console.time("positioning"); |
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var threshold = 0.01; |
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var counter = 0; |
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var maxIterations = 1500; |
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var maxEnergy = 2 * threshold; |
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var highE_nodeId = 0, |
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dE_dx = 0, |
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dE_dy = 0; |
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while (maxEnergy > threshold && counter < maxIterations) { |
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counter += 1; |
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var _getHighestEnergyNode2 = this._getHighestEnergyNode(); |
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var _getHighestEnergyNode22 = _slicedToArray(_getHighestEnergyNode2, 4); |
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highE_nodeId = _getHighestEnergyNode22[0]; |
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maxEnergy = _getHighestEnergyNode22[1]; |
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dE_dx = _getHighestEnergyNode22[2]; |
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dE_dy = _getHighestEnergyNode22[3]; |
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this._moveNode(highE_nodeId, dE_dx, dE_dy); |
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} |
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console.timeEnd("positioning"); |
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} |
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}, { |
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key: "_getHighestEnergyNode", |
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value: function _getHighestEnergyNode() { |
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var nodesArray = this.body.nodeIndices; |
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var maxEnergy = 0; |
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var maxEnergyNode = nodesArray[0]; |
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var energies = { dE_dx: 0, dE_dy: 0 }; |
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for (var nodeIdx = 0; nodeIdx < nodesArray.length; nodeIdx++) { |
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var m = nodesArray[nodeIdx]; |
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var _getEnergy2 = this._getEnergy(m); |
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var _getEnergy22 = _slicedToArray(_getEnergy2, 3); |
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var delta_m = _getEnergy22[0]; |
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var dE_dx = _getEnergy22[1]; |
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var dE_dy = _getEnergy22[2]; |
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if (maxEnergy < delta_m) { |
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maxEnergy = delta_m; |
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maxEnergyNode = m; |
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energies.dE_dx = dE_dx; |
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energies.dE_dy = dE_dy; |
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} |
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} |
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return [maxEnergyNode, maxEnergy, energies.dE_dx, energies.dE_dy]; |
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} |
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}, { |
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key: "_getEnergy", |
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value: function _getEnergy(m) { |
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var nodesArray = this.body.nodeIndices; |
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var nodes = this.body.nodes; |
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var x_m = nodes[m].x; |
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var y_m = nodes[m].y; |
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var dE_dx = 0; |
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var dE_dy = 0; |
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for (var iIdx = 0; iIdx < nodesArray.length; iIdx++) { |
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var i = nodesArray[iIdx]; |
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if (i !== m) { |
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var x_i = nodes[i].x; |
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var y_i = nodes[i].y; |
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var denominator = 1.0 / Math.sqrt(Math.pow(x_m - x_i, 2) + Math.pow(y_m - y_i, 2)); |
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dE_dx += this.K_matrix[m][i] * (x_m - x_i - this.L_matrix[m][i] * (x_m - x_i) * denominator); |
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dE_dy += this.K_matrix[m][i] * (y_m - y_i - this.L_matrix[m][i] * (y_m - y_i) * denominator); |
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} |
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} |
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var delta_m = Math.sqrt(Math.pow(dE_dx, 2) + Math.pow(dE_dy, 2)); |
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return [delta_m, dE_dx, dE_dy]; |
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} |
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}, { |
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key: "_moveNode", |
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value: function _moveNode(m, dE_dx, dE_dy) { |
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var nodesArray = this.body.nodeIndices; |
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var nodes = this.body.nodes; |
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var d2E_dx2 = 0; |
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var d2E_dxdy = 0; |
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var d2E_dy2 = 0; |
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var x_m = nodes[m].x; |
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var y_m = nodes[m].y; |
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for (var iIdx = 0; iIdx < nodesArray.length; iIdx++) { |
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var i = nodesArray[iIdx]; |
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if (i !== m) { |
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var x_i = nodes[i].x; |
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var y_i = nodes[i].y; |
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var denominator = 1.0 / Math.pow(Math.pow(x_m - x_i, 2) + Math.pow(y_m - y_i, 2), 1.5); |
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d2E_dx2 += this.K_matrix[m][i] * (1 - this.L_matrix[m][i] * Math.pow(y_m - y_i, 2) * denominator); |
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d2E_dxdy += this.K_matrix[m][i] * (this.L_matrix[m][i] * (x_m - x_i) * (y_m - y_i) * denominator); |
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d2E_dy2 += this.K_matrix[m][i] * (1 - this.L_matrix[m][i] * Math.pow(x_m - x_i, 2) * denominator); |
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} |
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} |
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// make the variable names easier to make the solving of the linear system easier to read
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var A = d2E_dx2, |
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B = d2E_dxdy, |
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C = dE_dx, |
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D = d2E_dy2, |
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E = dE_dy; |
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// solve the linear system for dx and dy
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var dy = (C / A + E / B) / (B / A - D / B); |
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var dx = -(B * dy + C) / A; |
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// move the node
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nodes[m].x += dx; |
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nodes[m].y += dy; |
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} |
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}, { |
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key: "_createL_matrix", |
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value: function _createL_matrix(D_matrix) { |
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var nodesArray = this.body.nodeIndices; |
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var edgeLength = this.springLength; |
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this.L_matrix = []; |
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for (var i = 0; i < nodesArray.length; i++) { |
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this.L_matrix[nodesArray[i]] = {}; |
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for (var j = 0; j < nodesArray.length; j++) { |
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this.L_matrix[nodesArray[i]][nodesArray[j]] = edgeLength * D_matrix[nodesArray[i]][nodesArray[j]]; |
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} |
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} |
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} |
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}, { |
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key: "_createK_matrix", |
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|
value: function _createK_matrix(D_matrix) { |
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|
var nodesArray = this.body.nodeIndices; |
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|
var edgeStrength = this.springConstant; |
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|
this.K_matrix = []; |
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for (var i = 0; i < nodesArray.length; i++) { |
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|
this.K_matrix[nodesArray[i]] = {}; |
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|
for (var j = 0; j < nodesArray.length; j++) { |
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|
|
this.K_matrix[nodesArray[i]][nodesArray[j]] = edgeStrength * Math.pow(D_matrix[nodesArray[i]][nodesArray[j]], -2); |
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|
} |
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|
} |
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|
} |
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|
}]); |
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|
|
return KamadaKawai; |
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|
|
})(); |
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|
|
exports["default"] = KamadaKawai; |
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|
|
module.exports = exports["default"]; |
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|
/***/ }, |
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|
/* 110 */ |
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|
/***/ function(module, exports) { |
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|
/** |
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|
|
* Created by Alex on 10-Aug-15. |
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|
*/ |
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|
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|
|
"use strict"; |
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|
|
|
|
|
|
|
|
|
|
Object.defineProperty(exports, "__esModule", { |
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|
|
|
|
value: true |
|
|
|
|
|
}); |
|
|
|
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|
|
var _createClass = (function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; })(); |
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|
|
function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } |
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|
|
var FloydWarshall = (function () { |
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|
|
|
|
function FloydWarshall() { |
|
|
|
|
|
_classCallCheck(this, FloydWarshall); |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
_createClass(FloydWarshall, [{ |
|
|
|
|
|
key: "getDistances", |
|
|
|
|
|
value: function getDistances(body, nodesArray, edgesArray) { |
|
|
|
|
|
var D_matrix = {}; |
|
|
|
|
|
var edges = body.edges; |
|
|
|
|
|
|
|
|
|
|
|
// prepare matrix with large numbers
|
|
|
|
|
|
for (var i = 0; i < nodesArray.length; i++) { |
|
|
|
|
|
D_matrix[nodesArray[i]] = {}; |
|
|
|
|
|
for (var j = 0; j < nodesArray.length; j++) { |
|
|
|
|
|
D_matrix[nodesArray[i]][nodesArray[j]] = 1e9; |
|
|
|
|
|
} |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
// put the weights for the edges in. This assumes unidirectionality.
|
|
|
|
|
|
for (var i = 0; i < edgesArray.length; i++) { |
|
|
|
|
|
var edge = edges[edgesArray[i]]; |
|
|
|
|
|
D_matrix[edge.fromId][edge.toId] = 1; |
|
|
|
|
|
D_matrix[edge.toId][edge.fromId] = 1; |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
// calculate all pair distances
|
|
|
|
|
|
for (var k = 0; k < nodesArray.length; k++) { |
|
|
|
|
|
for (var i = 0; i < nodesArray.length; i++) { |
|
|
|
|
|
for (var j = 0; j < nodesArray.length; j++) { |
|
|
|
|
|
D_matrix[nodesArray[i]][nodesArray[j]] = Math.min(D_matrix[nodesArray[i]][nodesArray[j]], D_matrix[nodesArray[i]][nodesArray[k]] + D_matrix[nodesArray[k]][nodesArray[j]]); |
|
|
|
|
|
} |
|
|
|
|
|
} |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
// remove the self references from the matrix
|
|
|
|
|
|
for (var i = 0; i < nodesArray.length; i++) { |
|
|
|
|
|
delete D_matrix[nodesArray[i]][nodesArray[i]]; |
|
|
|
|
|
} |
|
|
|
|
|
|
|
|
|
|
|
return D_matrix; |
|
|
|
|
|
} |
|
|
|
|
|
}]); |
|
|
|
|
|
|
|
|
|
|
|
return FloydWarshall; |
|
|
|
|
|
})(); |
|
|
|
|
|
|
|
|
|
|
|
exports["default"] = FloydWarshall; |
|
|
|
|
|
module.exports = exports["default"]; |
|
|
|
|
|
|
|
|
|
|
|
/***/ }, |
|
|
|
|
|
/* 111 */ |
|
|
/***/ function(module, exports, __webpack_require__) { |
|
|
/***/ function(module, exports, __webpack_require__) { |
|
|
|
|
|
|
|
|
'use strict'; |
|
|
'use strict'; |
|
@ -40390,7 +40677,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
module.exports = exports['default']; |
|
|
module.exports = exports['default']; |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 110 */ |
|
|
|
|
|
|
|
|
/* 112 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
/** |
|
|
/** |
|
@ -40886,7 +41173,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
exports.configureOptions = configureOptions; |
|
|
exports.configureOptions = configureOptions; |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 111 */ |
|
|
|
|
|
|
|
|
/* 113 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
/** |
|
|
/** |
|
@ -41173,7 +41460,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
} |
|
|
} |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 112 */ |
|
|
|
|
|
|
|
|
/* 114 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
/** |
|
|
/** |
|
@ -42071,7 +42358,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
exports.DOTToGraph = DOTToGraph; |
|
|
exports.DOTToGraph = DOTToGraph; |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 113 */ |
|
|
|
|
|
|
|
|
/* 115 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
'use strict'; |
|
|
'use strict'; |
|
@ -42143,7 +42430,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
exports.parseGephi = parseGephi; |
|
|
exports.parseGephi = parseGephi; |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 114 */ |
|
|
|
|
|
|
|
|
/* 116 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
/** |
|
|
/** |
|
@ -42269,7 +42556,7 @@ return /******/ (function(modules) { // webpackBootstrap |
|
|
module.exports = exports["default"]; |
|
|
module.exports = exports["default"]; |
|
|
|
|
|
|
|
|
/***/ }, |
|
|
/***/ }, |
|
|
/* 115 */ |
|
|
|
|
|
|
|
|
/* 117 */ |
|
|
/***/ function(module, exports) { |
|
|
/***/ function(module, exports) { |
|
|
|
|
|
|
|
|
// English
|
|
|
// English
|
|
|