From f6ff3a4c5c4bc5fa261142eb895c7f7d51d03dab Mon Sep 17 00:00:00 2001 From: Jeffery Russell Date: Wed, 1 Apr 2020 11:55:19 -0400 Subject: [PATCH] Initial Overleaf Import --- aapmsamp.bib | 483 ++++++++++++++++++++++++++++++++++++++++ aapmsamp.tex | 616 +++++++++++++++++++++++++++++++++++++++++++++++++++ aipsamp.bib | 482 ++++++++++++++++++++++++++++++++++++++++ aipsamp.tex | 610 ++++++++++++++++++++++++++++++++++++++++++++++++++ apssamp.bib | 484 ++++++++++++++++++++++++++++++++++++++++ main.tex | 330 +++++++++++++++++++++++++++ sorsamp.tex | 614 ++++++++++++++++++++++++++++++++++++++++++++++++++ 7 files changed, 3619 insertions(+) create mode 100644 aapmsamp.bib create mode 100644 aapmsamp.tex create mode 100644 aipsamp.bib create mode 100644 aipsamp.tex create mode 100644 apssamp.bib create mode 100644 main.tex create mode 100644 sorsamp.tex diff --git a/aapmsamp.bib b/aapmsamp.bib new file mode 100644 index 0000000..3172885 --- /dev/null +++ b/aapmsamp.bib @@ -0,0 +1,483 @@ +@PREAMBLE{ + "\providecommand{\noopsort}[1]{}" + # "\providecommand{\singleletter}[1]{#1}%" +} + +@BOOK{Bire82, + author = {N. D. Birell and P. C. W. Davies}, + year = 1982, + title = {Quantum Fields in Curved Space}, + publisher = {Cambridge University Press} +} + +@ARTICLE{feyn54, + author = "R. P. Feynman", + year = "1954", + journal = "Phys.\ Rev.", + volume = "94", + pages = "262", + doi = "10.1029/2002JD002268", +} + +@ARTICLE{epr, + author = "A. Einstein and {\relax Yu} Podolsky and N. Rosen", + year = "1935", + journal = "Phys.\ Rev.", + volume = "47", + pages = "777", +} + +@ARTICLE{Berman1983, + author = "Berman, Jr., G. P. and Izrailev, Jr., F. M.", + title = "Stability of nonlinear modes", + journal = "Physica D", + volume = "88", + pages = "445", + year = "1983", +} + +@ARTICLE{Davies1998, + author = "E. B. Davies and L. Parns", + title = "Trapped modes in acoustic waveguides", + journal = "Q. J. Mech. Appl. Math.", + volume = "51", + pages = "477--492", + year = "1988", +} + +@MISC{witten2001, + author = "Edward Witten", + eprint = "hep-th/0106109", + year = "2001", +} + +@INBOOK{Beutler1994, + author = "E. Beutler", + editor = "E. Beutler and M. A. Lichtman and B. W. Coller and T. S. Kipps", + title = "Williams Hematology", + chapter = "7", + pages = "654--662", + publisher = "McGraw-Hill", + year = "1994", + + edition = "5", + address = "New York", + volume = "2", +} + +@INBOOK{inbook-full, + author = "Donald E. Knuth", + title = "Fundamental Algorithms", + volume = 1, + series = "The Art of Computer Programming", + publisher = "Addison-Wesley", + address = "Reading, Massachusetts", + edition = "Second", + month = "10~" # jan, + year = "\noopsort{1973b}1973", + type = "Section", + chapter = "1.2", + pages = "10--119", + note = "A full INBOOK entry", +} + +@ARTICLE{Smith2005, + author = "J. S. Smith and G. W. Johnson", + journal = "Philos. Trans. R. Soc. London, Ser. B", + title = "", + year = "2005", + + volume = "777", + pages = "1395", +} + +@UNPUBLISHED{Smith2010, + author = "W. J. Smith and T. J. Johnson and B. G. Miller", + title = "Surface chemistry and preferential crystal orientation on a silicon surface", + note = "{J. Appl. Phys.} (unpublished)", + + month = "", + year = "", +} + +@UNPUBLISHED{Smith2010a, + author = "V. K. Smith and K. Johnson and M. O. Klein", + title = "Surface chemistry and preferential crystal orientation on a silicon surface", + note = "{J. Appl. Phys.} (submitted)", + + month = "", + year = "", +} + +@UNPUBLISHED{unpublished-full, + author = "Ulrich {\"{U}}nderwood and Ned {\~N}et and Paul {\={P}}ot", + title = "Lower Bounds for Wishful Research Results", + month = nov # ", " # dec, + year = 1988, + note = "Talk at Fanstord University (A full UNPUBLISHED entry)", +} + +@MISC{JohnsonMillerSmith2007, + + author = "M. P. Johnson and K. L. Miller and K. Smith", + title = "", + howpublished = "personal communication", + month = "1~" # may, + year = "2007", + note = "", +} + +@PROCEEDINGS{Smith2007, + title = "AIP Conf. Proc.", + year = "2007", + + editor = "J. Smith", + volume = "841", + number = "21", + series = "", + address = "", + month = "", + organization = "", + publisher = "", + note = "", +} + +@PROCEEDINGS{proceedings-full, + editor = "Wizard V. Oz and Mihalis Yannakakis", + title = "Proc. Fifteenth Annual", + number = 17, + series = "All ACM Conferences", + month = mar, + year = 1983, + address = "Boston", + organization = "ACM", + publisher = "Academic Press", + note = "A full PROCEEDINGS entry", +} + +@UNPUBLISHED{Burstyn2004, + author = "Y. Burstyn", + title = "{Proceedings of the 5th International Molecular Beam Epitaxy Conference, Santa Fe, NM}", + note = "(unpublished)", + + month = "5--8~" # oct, + year = "2004", +} + +@PROCEEDINGS{Quinn2001, + title = "{Proceedings of the 2003 Particle Accelerator Conference, Portland, OR, 12-16 May 2005}", + year = "2001", + + editor = "B. Quinn", + address = "New York", + publisher = "Wiley", + note = "Albeit the conference was held in 2005, it was the 2003 conference, and the proceedings were published in 2001; go figure", +} + +@ARTICLE{Agarwal2001, + author = "A. G. Agarwal", + title = "{Proceedings of the Fifth Low Temperature Conference, Madison, WI, 1999}", + journal = "Semiconductors", + year = "2001", + + volume = "66", + pages = "1238", +} + +@ARTICLE{SmithDA01, + author = "R. Smith", + title = "Hummingbirds are our friends", + journal = {J. Appl. Phys. (these proceedings)}, + year = "", + volume = "", + number = "", + pages = "", + month = "", + note = "Abstract No. DA-01", +} + +@ARTICLE{Smith2007a, + author = "J. Smith", + title = "", + journal = "Proc. SPIE", + year = "2007", + + volume = "124", + pages = "367", + note = "Required title is missing", +} + +@TECHREPORT{techreport-full, + author = "Tom T{\'{e}}rrific", + title = "An {$O(n \log n / \! \log\log n)$} Sorting Algorithm", + institution = "Fanstord University", + type = "Wishful Research Result", + number = "7", + address = "Computer Science Department, Fanstord, California", + month = oct, + year = 1988, + note = "A full TECHREPORT entry", +} + +@TECHREPORT{Nelson1999, + author = "J. Nelson", + type = "{TWI Report}", + number = "666/1999", + institution = "", + year = jan # "~1999", + + note = "Required institution missing", +} + +@TECHREPORT{Fields2005, + author = "W. K. Fields", + type = "{ECE Report No.}", + number = "AL944", + institution = "", + year = "2005", + + note = "Required institution missing", +} + +@MISC{Zalkins2008, + + author = "Y. M. Zalkins", + title = "", + howpublished = "e-print arXiv:cond-mat/040426", + month = "", + year = "2008", + note = "", +} + +@MISC{Nelson2005, + + author = "J. Nelson", + howpublished = "{U.S. Patent No.} 5,693,000", + year = "12~" # dec # "~2005", +} + +@MASTERSTHESIS{Nelson1999a, + author = "J. K. Nelson", + title = "", + school = "New York University", + year = "1999", + + type = "M.{S}. thesis", + address = "", + month = "", + note = "", +} + +@MASTERSTHESIS{mastersthesis-full, + author = "{\'{E}}douard Masterly", + title = "Mastering Thesis Writing", + school = "Stanford University", + type = "Master's project", + address = "English Department", + month = jun # "-" # aug, + year = 1988, + note = "A full MASTERSTHESIS entry", +} + +@PHDTHESIS{Smith2003, + author = "S. M. Smith", + title = "", + school = "Massachusetts Institute of Technology", + year = "2003", + + type = "{Ph.D.} thesis", + address = "", + month = "", + note = "", +} + +@ARTICLE{KawaLin2003, + author = "S. R. Kawa and S.-J. Lin", + title = "", + journal = "J. Geophys. Res.", + year = "2003", + + volume = "108", + number = "D6", + pages = "4201", + month = "", + note = "{DOI:10.1029/2002JD002268}", +} + +@PHDTHESIS{phdthesis-full, + author = "F. Phidias Phony-Baloney", + title = "Fighting Fire with Fire: Festooning {F}rench Phrases", + school = "Fanstord University", + type = "{PhD} Dissertation", + address = "Department of French", + month = jun # "-" # aug, + year = 1988, + note = "A full PHDTHESIS entry", +} + +@BOOK{book-full, + author = "Donald E. Knuth", + title = "Seminumerical Algorithms", + volume = 2, + series = "The Art of Computer Programming", + publisher = "Addison-Wesley", + address = "Reading, Massachusetts", + edition = "Second", + month = "10~" # jan, + year = "\noopsort{1973c}1981", + note = "A full BOOK entry", +} + +@BOOKLET{booklet-full, + author = "Jill C. Knvth", + title = "The Programming of Computer Art", + howpublished = "Vernier Art Center", + address = "Stanford, California", + month = feb, + year = 1988, + note = "A full BOOKLET entry", +} + +@INBOOK{ballagh2000, + author = "R. Ballagh and C.M. Savage", + editor = "C.M. Savage and M. Das", + title = "Bose-Einstein condensation: from atomic physics to quantum fluids, Proceedings of the 13th Physics Summer School", + year = "2000", + publisher = "World Scientific", + address = "Singapore", + eprint = "cond-mat/0008070", +} + +@inBook{Magnetism, + author = "W. Opechowski and R. Guccione", + title = "Introduction to the Theory of Normal Metals", + volume = "IIa", + pages = "105", + editor = "G. T. Rado and H. Suhl", + booktitle = "Magnetism", + publisher = "Academic Press", + address = "New York", +} + year = "1965", + +@INPROCEEDINGS{Magnetismb, + author = "W. Opechowski and R. Guccione", + title = "Introduction to the Theory of Normal Metals", + editor = "G. T. Rado and H. Suhl", + booktitle = "Magnetism", + volume = "IIa", + pages = "105", + publisher = "Academic Press", + address = "New York", + year = "1965", +} + +@INBOOK{Smith80, + author = "J. M. Smith", + title = "Molecular Dynamics", + publisher = "Academic", + year = "1980", + address = "New York", + editor = "C. Brown", +} + +@article{ZS71, + author = "V. E. Zakharov and A. B. Shabat", + year = "1971", + title = "Exact theory of two-dimensional self-focusing and one-dimensional self-modulation of waves in nonlinear media", + journal = "Zh. Eksp. Teor. Fiz.", + volume = "61", + pages = "118--134", + translation = "Sov. Phys. JETP \textbf{34}, 62 (1972)" +} + +@INCOLLECTION{Beutler1994a, + author = "E. Beutler", + year = "1994", + booktitle = "Williams Hematology", + edition = "5", + chapter = "7", + editor = "E. Beutler and M. A. Lichtman and B. W. Coller and T. S. Kipps", + publisher = "McGraw-Hill", + address = "New York", + volume = "2", + pages = "654--662", +} + +@INCOLLECTION{ballagh2000a, + author = "R. Ballagh and C.M. Savage", + year = "2000", + title = "Bose-Einstein condensation: from atomic physics to quantum fluids", + booktitle = "Proceedings of the 13th Physics Summer School", + editor = "C.M. Savage and M. Das", + publisher = "World Scientific", + address = "Singapore", + eprint = "cond-mat/0008070", +} + +@INCOLLECTION{Magnetisma, + author = "W. Opechowski and R. Guccione", + year = "1965", + title = "Introduction to the Theory of Normal Metals", + booktitle = "Magnetism", + editor = "G. T. Rado and H. Suhl", + publisher = "Academic Press", + address = "New York", + volume = "IIa", + pages = "105", +} + +@INCOLLECTION{Smith80a, + author = "J. M. Smith", + year = "1980", + booktitle = "Molecular Dynamics", + editor = "C. Brown", + publisher = "Academic", + address = "New York", +} + +@INCOLLECTION{incollection-full, + key = "incol-ful", + author = "Daniel D. Lincoll", + year = 1977, + title = "Semigroups of Recurrences", + booktitle = "High Speed Computer and Algorithm Organization", + edition = "Third", + series = "Fast Computers", + number = 23, + chapter = 3, + type = "Part", + editor = "David J. Lipcoll and D. H. Lawrie and A. H. Sameh", + publisher = "Academic Press", + address = "New York", + month = sep, + pages = "179--183", + note = "A full INCOLLECTION entry", +} + +@INPROCEEDINGS{inproceedings-full, + author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", + title = "On Notions of Information Transfer in {VLSI} Circuits", + editor = "Wizard V. Oz and Mihalis Yannakakis", + booktitle = "Proc. Fifteenth Annual ACM", + number = 17, + series = "All ACM Conferences", + pages = "133--139", + month = mar, + year = 1983, + address = "Boston", + organization = "ACM", + publisher = "Academic Press", + note = "A full INPROCEDINGS entry", +} + +@MANUAL{manual-full, + author = "Larry Manmaker", + title = "The Definitive Computer Manual", + organization = "Chips-R-Us", + address = "Silicon Valley", + edition = "Silver", + month = apr # "-" # may, + year = 1986, + note = "A full MANUAL entry", +} diff --git a/aapmsamp.tex b/aapmsamp.tex new file mode 100644 index 0000000..e1c5ff9 --- /dev/null +++ b/aapmsamp.tex @@ -0,0 +1,616 @@ +% ****** Start of file aapmsamp.tex ****** +% +% This file is part of the AAPM files in the AAPM distribution for REVTeX 4-2. +% Version 4.2a of REVTeX, January 2015 +% +% Copyright (c) 2015 American Association of Physicists in Medicine (AAPM). +% +% See the AAPM README file for restrictions and more information. +% +% TeX'ing this file requires that you have AMS-LaTeX 2.0 installed +% as well as the rest of the prerequisites for REVTeX 4.2 +% +% It also requires running BibTeX. The commands are as follows: +% +% 1) latex aapmsamp +% 2) bibtex aapmsamp +% 3) latex aapmsamp +% 4) latex aapmsamp +% +% Use this file as a source of example code for your aapm document. +% Use the file aapmtemplate.tex as a template for your document. +\documentclass[% + aapm, + mph,% + amsmath,amssymb, +%preprint,% + reprint,% +%author-year,% +%author-numerical,% +]{revtex4-2} + +\usepackage{graphicx}% Include figure files +\usepackage{dcolumn}% Align table columns on decimal point +\usepackage{bm}% bold math + +\usepackage[mathlines]{lineno}% Enable numbering of text and display math +\modulolinenumbers[5]% Line numbers with a gap of 5 lines +\linenumbers\relax % Commence numbering lines + +\begin{document} + +\preprint{AAPM/123-QED} + +\title[Sample title]{Sample Title:\\with Forced Linebreak\footnote{Error!}}% Force line breaks with \\ +\thanks{Footnote to title of article.} + +\author{A. Author} + \altaffiliation[Also at ]{Physics Department, XYZ University.}%Lines break automatically or can be forced with \\ +\author{B. Author}% + \email{Second.Author@institution.edu.} +\affiliation{ +Authors' institution and/or address%\\This line break forced with \textbackslash\textbackslash +}% + +\author{C. Author} + \homepage{http://www.Second.institution.edu/~Charlie.Author.} +\affiliation{% +Second institution and/or address%\\This line break forced% with \\ +}% + +\date{\today}% It is always \today, today, + % but any date may be explicitly specified + +\begin{abstract} +An article usually includes an abstract, a concise summary of the work +covered at length in the main body of the article. It is used for +secondary publications and for information retrieval purposes. +% +\end{abstract} + +\keywords{Suggested keywords}%Use showkeys class option if keyword + %display desired +\maketitle + +\begin{quotation} +The ``lead paragraph'' is encapsulated with the \LaTeX\ +\verb+quotation+ environment and is formatted as a single paragraph before the first section heading. +(The \verb+quotation+ environment reverts to its usual meaning after the first sectioning command.) +Note that numbered references are allowed in the lead paragraph. +% +The lead paragraph will only be found in an article being prepared for the journal \textit{Chaos}. +\end{quotation} + +\section{\label{sec:level1}First-level heading:\protect\\ The line +break was forced \lowercase{via} \textbackslash\textbackslash} + +This sample document demonstrates proper use of REV\TeX~4.2 (and +\LaTeXe) in manuscripts prepared for submission to AAPM +journals. Further information can be found in the documentation included in the distribution or available at +\url{http://www.aapm.org} and in the documentation for +REV\TeX~4.2 itself. + +When commands are referred to in this example file, they are always +shown with their required arguments, using normal \TeX{} format. In +this format, \verb+#1+, \verb+#2+, etc. stand for required +author-supplied arguments to commands. For example, in +\verb+\section{#1}+ the \verb+#1+ stands for the title text of the +author's section heading, and in \verb+\title{#1}+ the \verb+#1+ +stands for the title text of the paper. + +Line breaks in section headings at all levels can be introduced using +\textbackslash\textbackslash. A blank input line tells \TeX\ that the +paragraph has ended. + +\subsection{\label{sec:level2}Second-level heading: Formatting} + +This file may be formatted in both the \texttt{preprint} (the default) and +\texttt{reprint} styles; the latter format may be used to +mimic final journal output. In addition, there is another +option available, \texttt{lengthcheck}, which formats the document as closely +as possible to an actual journal article, to facilitate the author's +performance of a length check. Either format may be used for submission +purposes; however, for peer review and production, AAPM will format the +article using the \texttt{preprint} class option. Hence, it is +essential that authors check that their manuscripts format acceptably +under \texttt{preprint}. Manuscripts submitted to AAPM that do not +format correctly under the \texttt{preprint} option may be delayed in +both the editorial and production processes. + +The \texttt{widetext} environment will make the text the width of the +full page, as on page~\pageref{eq:wideeq}. (Note the use the +\verb+\pageref{#1}+ to get the page number right automatically.) The +width-changing commands only take effect in \texttt{twocolumn} +formatting. It has no effect if \texttt{preprint} formatting is chosen +instead. + +\subsubsection{\label{sec:level3}Third-level heading: Citations and Footnotes} + +Citations in text refer to entries in the Bibliography; +they use the commands \verb+\cite{#1}+ or \verb+\onlinecite{#1}+. +Because REV\TeX\ uses the \verb+natbib+ package of Patrick Daly, +its entire repertoire of commands are available in your document; +see the \verb+natbib+ documentation for further details. +The argument of \verb+\cite+ is a comma-separated list of \emph{keys}; +a key may consist of letters and numerals. + +By default, AAPM citations are numerical; \cite{feyn54} +to give a textual citation, use \verb+\onlinecite{#1}+: (Refs.~\onlinecite{witten2001,epr,Bire82}). +REV\TeX\ ``collapses'' lists of consecutive numerical citations when appropriate. +To illustrate, we cite several together \cite{feyn54,witten2001,epr,Berman1983}, +and once again (Refs.~\onlinecite{epr,feyn54,Bire82,Berman1983}). +Note that, when numerical citations are used, the references were sorted into the same order they appear in the bibliography. + +A reference within the bibliography is specified with a \verb+\bibitem{#1}+ command, +where the argument is the citation key mentioned above. +\verb+\bibitem{#1}+ commands may be crafted by hand or, preferably, +generated by using Bib\TeX. +The AAPM styles for REV\TeX~4 include Bib\TeX\ style file +\verb+aapmrev4-2.bst+, appropriate for +numbered bibliography. +REV\TeX~4 will automatically choose the style appropriate for +the document's selected class options: the default is numerical. + +This sample file demonstrates a simple use of Bib\TeX\ +via a \verb+\bibliography+ command referencing the \verb+aapmsamp.bib+ file. +Running Bib\TeX\ (in this case \texttt{bibtex +aapmsamp}) after the first pass of \LaTeX\ produces the file +\verb+aapmsamp.bbl+ which contains the automatically formatted +\verb+\bibitem+ commands (including extra markup information via +\verb+\bibinfo+ commands). If not using Bib\TeX, the +\verb+thebibiliography+ environment should be used instead. + +\paragraph{Fourth-level heading is run in.}% +Footnotes are produced using the \verb+\footnote{#1}+ command. +Numerical style citations put footnotes into the +bibliography\footnote{Automatically placing footnotes into the bibliography requires using BibTeX to compile the bibliography.}. +Note: due to the method used to place footnotes in the bibliography, \emph{you +must re-run BibTeX every time you change any of your document's +footnotes}. + +\section{Math and Equations} +Inline math may be typeset using the \verb+$+ delimiters. Bold math +symbols may be achieved using the \verb+bm+ package and the +\verb+\bm{#1}+ command it supplies. For instance, a bold $\alpha$ can +be typeset as \verb+$\bm{\alpha}$+ giving $\bm{\alpha}$. Fraktur and +Blackboard (or open face or double struck) characters should be +typeset using the \verb+\mathfrak{#1}+ and \verb+\mathbb{#1}+ commands +respectively. Both are supplied by the \texttt{amssymb} package. For +example, \verb+$\mathbb{R}$+ gives $\mathbb{R}$ and +\verb+$\mathfrak{G}$+ gives $\mathfrak{G}$ + +In \LaTeX\ there are many different ways to display equations, and a +few preferred ways are noted below. Displayed math will flush left by +default. + +Below we have numbered single-line equations, the most common kind: +\begin{eqnarray} +\chi_+(p)\alt{\bf [}2|{\bf p}|(|{\bf p}|+p_z){\bf ]}^{-1/2} +\left( +\begin{array}{c} +|{\bf p}|+p_z\\ +px+ip_y +\end{array}\right)\;, +\\ +\left\{% + \openone234567890abc123\alpha\beta\gamma\delta1234556\alpha\beta + \frac{1\sum^{a}_{b}}{A^2}% +\right\}% +\label{eq:one}. +\end{eqnarray} +Note the open one in Eq.~(\ref{eq:one}). + +Not all numbered equations will fit within a narrow column this +way. The equation number will move down automatically if it cannot fit +on the same line with a one-line equation: +\begin{equation} +\left\{ + ab12345678abc123456abcdef\alpha\beta\gamma\delta1234556\alpha\beta + \frac{1\sum^{a}_{b}}{A^2}% +\right\}. +\end{equation} + +When the \verb+\label{#1}+ command is used [cf. input for +Eq.~(\ref{eq:one})], the equation can be referred to in text without +knowing the equation number that \TeX\ will assign to it. Just +use \verb+\ref{#1}+, where \verb+#1+ is the same name that used in +the \verb+\label{#1}+ command. + +Unnumbered single-line equations can be typeset +using the \verb+\[+, \verb+\]+ format: +\[g^+g^+ \rightarrow g^+g^+g^+g^+ \dots ~,~~q^+q^+\rightarrow +q^+g^+g^+ \dots ~. \] + +\subsection{Multiline equations} + +Multiline equations are obtained by using the \verb+eqnarray+ +environment. Use the \verb+\nonumber+ command at the end of each line +to avoid assigning a number: +\begin{eqnarray} +{\cal M}=&&ig_Z^2(4E_1E_2)^{1/2}(l_i^2)^{-1} +\delta_{\sigma_1,-\sigma_2} +(g_{\sigma_2}^e)^2\chi_{-\sigma_2}(p_2)\nonumber\\ +&&\times +[\epsilon_jl_i\epsilon_i]_{\sigma_1}\chi_{\sigma_1}(p_1), +\end{eqnarray} +\begin{eqnarray} +\sum \vert M^{\text{viol}}_g \vert ^2&=&g^{2n-4}_S(Q^2)~N^{n-2} + (N^2-1)\nonumber \\ + & &\times \left( \sum_{i