diff --git a/aapmsamp.bib b/aapmsamp.bib deleted file mode 100644 index 3172885..0000000 --- a/aapmsamp.bib +++ /dev/null @@ -1,483 +0,0 @@ -@PREAMBLE{ - "\providecommand{\noopsort}[1]{}" - # "\providecommand{\singleletter}[1]{#1}%" -} - -@BOOK{Bire82, - author = {N. D. Birell and P. C. W. Davies}, - year = 1982, - title = {Quantum Fields in Curved Space}, - publisher = {Cambridge University Press} -} - -@ARTICLE{feyn54, - author = "R. P. Feynman", - year = "1954", - journal = "Phys.\ Rev.", - volume = "94", - pages = "262", - doi = "10.1029/2002JD002268", -} - -@ARTICLE{epr, - author = "A. Einstein and {\relax Yu} Podolsky and N. Rosen", - year = "1935", - journal = "Phys.\ Rev.", - volume = "47", - pages = "777", -} - -@ARTICLE{Berman1983, - author = "Berman, Jr., G. P. and Izrailev, Jr., F. M.", - title = "Stability of nonlinear modes", - journal = "Physica D", - volume = "88", - pages = "445", - year = "1983", -} - -@ARTICLE{Davies1998, - author = "E. B. Davies and L. Parns", - title = "Trapped modes in acoustic waveguides", - journal = "Q. J. Mech. Appl. Math.", - volume = "51", - pages = "477--492", - year = "1988", -} - -@MISC{witten2001, - author = "Edward Witten", - eprint = "hep-th/0106109", - year = "2001", -} - -@INBOOK{Beutler1994, - author = "E. Beutler", - editor = "E. Beutler and M. A. Lichtman and B. W. Coller and T. S. Kipps", - title = "Williams Hematology", - chapter = "7", - pages = "654--662", - publisher = "McGraw-Hill", - year = "1994", - - edition = "5", - address = "New York", - volume = "2", -} - -@INBOOK{inbook-full, - author = "Donald E. Knuth", - title = "Fundamental Algorithms", - volume = 1, - series = "The Art of Computer Programming", - publisher = "Addison-Wesley", - address = "Reading, Massachusetts", - edition = "Second", - month = "10~" # jan, - year = "\noopsort{1973b}1973", - type = "Section", - chapter = "1.2", - pages = "10--119", - note = "A full INBOOK entry", -} - -@ARTICLE{Smith2005, - author = "J. S. Smith and G. W. Johnson", - journal = "Philos. Trans. R. Soc. London, Ser. B", - title = "", - year = "2005", - - volume = "777", - pages = "1395", -} - -@UNPUBLISHED{Smith2010, - author = "W. J. Smith and T. J. Johnson and B. G. Miller", - title = "Surface chemistry and preferential crystal orientation on a silicon surface", - note = "{J. Appl. Phys.} (unpublished)", - - month = "", - year = "", -} - -@UNPUBLISHED{Smith2010a, - author = "V. K. Smith and K. Johnson and M. O. Klein", - title = "Surface chemistry and preferential crystal orientation on a silicon surface", - note = "{J. Appl. Phys.} (submitted)", - - month = "", - year = "", -} - -@UNPUBLISHED{unpublished-full, - author = "Ulrich {\"{U}}nderwood and Ned {\~N}et and Paul {\={P}}ot", - title = "Lower Bounds for Wishful Research Results", - month = nov # ", " # dec, - year = 1988, - note = "Talk at Fanstord University (A full UNPUBLISHED entry)", -} - -@MISC{JohnsonMillerSmith2007, - - author = "M. P. Johnson and K. L. Miller and K. Smith", - title = "", - howpublished = "personal communication", - month = "1~" # may, - year = "2007", - note = "", -} - -@PROCEEDINGS{Smith2007, - title = "AIP Conf. Proc.", - year = "2007", - - editor = "J. Smith", - volume = "841", - number = "21", - series = "", - address = "", - month = "", - organization = "", - publisher = "", - note = "", -} - -@PROCEEDINGS{proceedings-full, - editor = "Wizard V. Oz and Mihalis Yannakakis", - title = "Proc. Fifteenth Annual", - number = 17, - series = "All ACM Conferences", - month = mar, - year = 1983, - address = "Boston", - organization = "ACM", - publisher = "Academic Press", - note = "A full PROCEEDINGS entry", -} - -@UNPUBLISHED{Burstyn2004, - author = "Y. Burstyn", - title = "{Proceedings of the 5th International Molecular Beam Epitaxy Conference, Santa Fe, NM}", - note = "(unpublished)", - - month = "5--8~" # oct, - year = "2004", -} - -@PROCEEDINGS{Quinn2001, - title = "{Proceedings of the 2003 Particle Accelerator Conference, Portland, OR, 12-16 May 2005}", - year = "2001", - - editor = "B. Quinn", - address = "New York", - publisher = "Wiley", - note = "Albeit the conference was held in 2005, it was the 2003 conference, and the proceedings were published in 2001; go figure", -} - -@ARTICLE{Agarwal2001, - author = "A. G. Agarwal", - title = "{Proceedings of the Fifth Low Temperature Conference, Madison, WI, 1999}", - journal = "Semiconductors", - year = "2001", - - volume = "66", - pages = "1238", -} - -@ARTICLE{SmithDA01, - author = "R. Smith", - title = "Hummingbirds are our friends", - journal = {J. Appl. Phys. (these proceedings)}, - year = "", - volume = "", - number = "", - pages = "", - month = "", - note = "Abstract No. DA-01", -} - -@ARTICLE{Smith2007a, - author = "J. Smith", - title = "", - journal = "Proc. SPIE", - year = "2007", - - volume = "124", - pages = "367", - note = "Required title is missing", -} - -@TECHREPORT{techreport-full, - author = "Tom T{\'{e}}rrific", - title = "An {$O(n \log n / \! \log\log n)$} Sorting Algorithm", - institution = "Fanstord University", - type = "Wishful Research Result", - number = "7", - address = "Computer Science Department, Fanstord, California", - month = oct, - year = 1988, - note = "A full TECHREPORT entry", -} - -@TECHREPORT{Nelson1999, - author = "J. Nelson", - type = "{TWI Report}", - number = "666/1999", - institution = "", - year = jan # "~1999", - - note = "Required institution missing", -} - -@TECHREPORT{Fields2005, - author = "W. K. Fields", - type = "{ECE Report No.}", - number = "AL944", - institution = "", - year = "2005", - - note = "Required institution missing", -} - -@MISC{Zalkins2008, - - author = "Y. M. Zalkins", - title = "", - howpublished = "e-print arXiv:cond-mat/040426", - month = "", - year = "2008", - note = "", -} - -@MISC{Nelson2005, - - author = "J. Nelson", - howpublished = "{U.S. Patent No.} 5,693,000", - year = "12~" # dec # "~2005", -} - -@MASTERSTHESIS{Nelson1999a, - author = "J. K. Nelson", - title = "", - school = "New York University", - year = "1999", - - type = "M.{S}. thesis", - address = "", - month = "", - note = "", -} - -@MASTERSTHESIS{mastersthesis-full, - author = "{\'{E}}douard Masterly", - title = "Mastering Thesis Writing", - school = "Stanford University", - type = "Master's project", - address = "English Department", - month = jun # "-" # aug, - year = 1988, - note = "A full MASTERSTHESIS entry", -} - -@PHDTHESIS{Smith2003, - author = "S. M. Smith", - title = "", - school = "Massachusetts Institute of Technology", - year = "2003", - - type = "{Ph.D.} thesis", - address = "", - month = "", - note = "", -} - -@ARTICLE{KawaLin2003, - author = "S. R. Kawa and S.-J. Lin", - title = "", - journal = "J. Geophys. Res.", - year = "2003", - - volume = "108", - number = "D6", - pages = "4201", - month = "", - note = "{DOI:10.1029/2002JD002268}", -} - -@PHDTHESIS{phdthesis-full, - author = "F. Phidias Phony-Baloney", - title = "Fighting Fire with Fire: Festooning {F}rench Phrases", - school = "Fanstord University", - type = "{PhD} Dissertation", - address = "Department of French", - month = jun # "-" # aug, - year = 1988, - note = "A full PHDTHESIS entry", -} - -@BOOK{book-full, - author = "Donald E. Knuth", - title = "Seminumerical Algorithms", - volume = 2, - series = "The Art of Computer Programming", - publisher = "Addison-Wesley", - address = "Reading, Massachusetts", - edition = "Second", - month = "10~" # jan, - year = "\noopsort{1973c}1981", - note = "A full BOOK entry", -} - -@BOOKLET{booklet-full, - author = "Jill C. Knvth", - title = "The Programming of Computer Art", - howpublished = "Vernier Art Center", - address = "Stanford, California", - month = feb, - year = 1988, - note = "A full BOOKLET entry", -} - -@INBOOK{ballagh2000, - author = "R. Ballagh and C.M. Savage", - editor = "C.M. Savage and M. Das", - title = "Bose-Einstein condensation: from atomic physics to quantum fluids, Proceedings of the 13th Physics Summer School", - year = "2000", - publisher = "World Scientific", - address = "Singapore", - eprint = "cond-mat/0008070", -} - -@inBook{Magnetism, - author = "W. Opechowski and R. Guccione", - title = "Introduction to the Theory of Normal Metals", - volume = "IIa", - pages = "105", - editor = "G. T. Rado and H. Suhl", - booktitle = "Magnetism", - publisher = "Academic Press", - address = "New York", -} - year = "1965", - -@INPROCEEDINGS{Magnetismb, - author = "W. Opechowski and R. Guccione", - title = "Introduction to the Theory of Normal Metals", - editor = "G. T. Rado and H. Suhl", - booktitle = "Magnetism", - volume = "IIa", - pages = "105", - publisher = "Academic Press", - address = "New York", - year = "1965", -} - -@INBOOK{Smith80, - author = "J. M. Smith", - title = "Molecular Dynamics", - publisher = "Academic", - year = "1980", - address = "New York", - editor = "C. Brown", -} - -@article{ZS71, - author = "V. E. Zakharov and A. B. Shabat", - year = "1971", - title = "Exact theory of two-dimensional self-focusing and one-dimensional self-modulation of waves in nonlinear media", - journal = "Zh. Eksp. Teor. Fiz.", - volume = "61", - pages = "118--134", - translation = "Sov. Phys. JETP \textbf{34}, 62 (1972)" -} - -@INCOLLECTION{Beutler1994a, - author = "E. Beutler", - year = "1994", - booktitle = "Williams Hematology", - edition = "5", - chapter = "7", - editor = "E. Beutler and M. A. Lichtman and B. W. Coller and T. S. Kipps", - publisher = "McGraw-Hill", - address = "New York", - volume = "2", - pages = "654--662", -} - -@INCOLLECTION{ballagh2000a, - author = "R. Ballagh and C.M. Savage", - year = "2000", - title = "Bose-Einstein condensation: from atomic physics to quantum fluids", - booktitle = "Proceedings of the 13th Physics Summer School", - editor = "C.M. Savage and M. Das", - publisher = "World Scientific", - address = "Singapore", - eprint = "cond-mat/0008070", -} - -@INCOLLECTION{Magnetisma, - author = "W. Opechowski and R. Guccione", - year = "1965", - title = "Introduction to the Theory of Normal Metals", - booktitle = "Magnetism", - editor = "G. T. Rado and H. Suhl", - publisher = "Academic Press", - address = "New York", - volume = "IIa", - pages = "105", -} - -@INCOLLECTION{Smith80a, - author = "J. M. Smith", - year = "1980", - booktitle = "Molecular Dynamics", - editor = "C. Brown", - publisher = "Academic", - address = "New York", -} - -@INCOLLECTION{incollection-full, - key = "incol-ful", - author = "Daniel D. Lincoll", - year = 1977, - title = "Semigroups of Recurrences", - booktitle = "High Speed Computer and Algorithm Organization", - edition = "Third", - series = "Fast Computers", - number = 23, - chapter = 3, - type = "Part", - editor = "David J. Lipcoll and D. H. Lawrie and A. H. Sameh", - publisher = "Academic Press", - address = "New York", - month = sep, - pages = "179--183", - note = "A full INCOLLECTION entry", -} - -@INPROCEEDINGS{inproceedings-full, - author = "Alfred V. Oaho and Jeffrey D. Ullman and Mihalis Yannakakis", - title = "On Notions of Information Transfer in {VLSI} Circuits", - editor = "Wizard V. Oz and Mihalis Yannakakis", - booktitle = "Proc. Fifteenth Annual ACM", - number = 17, - series = "All ACM Conferences", - pages = "133--139", - month = mar, - year = 1983, - address = "Boston", - organization = "ACM", - publisher = "Academic Press", - note = "A full INPROCEDINGS entry", -} - -@MANUAL{manual-full, - author = "Larry Manmaker", - title = "The Definitive Computer Manual", - organization = "Chips-R-Us", - address = "Silicon Valley", - edition = "Silver", - month = apr # "-" # may, - year = 1986, - note = "A full MANUAL entry", -} diff --git a/aapmsamp.tex b/aapmsamp.tex deleted file mode 100644 index e1c5ff9..0000000 --- a/aapmsamp.tex +++ /dev/null @@ -1,616 +0,0 @@ -% ****** Start of file aapmsamp.tex ****** -% -% This file is part of the AAPM files in the AAPM distribution for REVTeX 4-2. -% Version 4.2a of REVTeX, January 2015 -% -% Copyright (c) 2015 American Association of Physicists in Medicine (AAPM). -% -% See the AAPM README file for restrictions and more information. -% -% TeX'ing this file requires that you have AMS-LaTeX 2.0 installed -% as well as the rest of the prerequisites for REVTeX 4.2 -% -% It also requires running BibTeX. The commands are as follows: -% -% 1) latex aapmsamp -% 2) bibtex aapmsamp -% 3) latex aapmsamp -% 4) latex aapmsamp -% -% Use this file as a source of example code for your aapm document. -% Use the file aapmtemplate.tex as a template for your document. -\documentclass[% - aapm, - mph,% - amsmath,amssymb, -%preprint,% - reprint,% -%author-year,% -%author-numerical,% -]{revtex4-2} - -\usepackage{graphicx}% Include figure files -\usepackage{dcolumn}% Align table columns on decimal point -\usepackage{bm}% bold math - -\usepackage[mathlines]{lineno}% Enable numbering of text and display math -\modulolinenumbers[5]% Line numbers with a gap of 5 lines -\linenumbers\relax % Commence numbering lines - -\begin{document} - -\preprint{AAPM/123-QED} - -\title[Sample title]{Sample Title:\\with Forced Linebreak\footnote{Error!}}% Force line breaks with \\ -\thanks{Footnote to title of article.} - -\author{A. Author} - \altaffiliation[Also at ]{Physics Department, XYZ University.}%Lines break automatically or can be forced with \\ -\author{B. Author}% - \email{Second.Author@institution.edu.} -\affiliation{ -Authors' institution and/or address%\\This line break forced with \textbackslash\textbackslash -}% - -\author{C. Author} - \homepage{http://www.Second.institution.edu/~Charlie.Author.} -\affiliation{% -Second institution and/or address%\\This line break forced% with \\ -}% - -\date{\today}% It is always \today, today, - % but any date may be explicitly specified - -\begin{abstract} -An article usually includes an abstract, a concise summary of the work -covered at length in the main body of the article. It is used for -secondary publications and for information retrieval purposes. -% -\end{abstract} - -\keywords{Suggested keywords}%Use showkeys class option if keyword - %display desired -\maketitle - -\begin{quotation} -The ``lead paragraph'' is encapsulated with the \LaTeX\ -\verb+quotation+ environment and is formatted as a single paragraph before the first section heading. -(The \verb+quotation+ environment reverts to its usual meaning after the first sectioning command.) -Note that numbered references are allowed in the lead paragraph. -% -The lead paragraph will only be found in an article being prepared for the journal \textit{Chaos}. -\end{quotation} - -\section{\label{sec:level1}First-level heading:\protect\\ The line -break was forced \lowercase{via} \textbackslash\textbackslash} - -This sample document demonstrates proper use of REV\TeX~4.2 (and -\LaTeXe) in manuscripts prepared for submission to AAPM -journals. Further information can be found in the documentation included in the distribution or available at -\url{http://www.aapm.org} and in the documentation for -REV\TeX~4.2 itself. - -When commands are referred to in this example file, they are always -shown with their required arguments, using normal \TeX{} format. In -this format, \verb+#1+, \verb+#2+, etc. stand for required -author-supplied arguments to commands. For example, in -\verb+\section{#1}+ the \verb+#1+ stands for the title text of the -author's section heading, and in \verb+\title{#1}+ the \verb+#1+ -stands for the title text of the paper. - -Line breaks in section headings at all levels can be introduced using -\textbackslash\textbackslash. A blank input line tells \TeX\ that the -paragraph has ended. - -\subsection{\label{sec:level2}Second-level heading: Formatting} - -This file may be formatted in both the \texttt{preprint} (the default) and -\texttt{reprint} styles; the latter format may be used to -mimic final journal output. In addition, there is another -option available, \texttt{lengthcheck}, which formats the document as closely -as possible to an actual journal article, to facilitate the author's -performance of a length check. Either format may be used for submission -purposes; however, for peer review and production, AAPM will format the -article using the \texttt{preprint} class option. Hence, it is -essential that authors check that their manuscripts format acceptably -under \texttt{preprint}. Manuscripts submitted to AAPM that do not -format correctly under the \texttt{preprint} option may be delayed in -both the editorial and production processes. - -The \texttt{widetext} environment will make the text the width of the -full page, as on page~\pageref{eq:wideeq}. (Note the use the -\verb+\pageref{#1}+ to get the page number right automatically.) The -width-changing commands only take effect in \texttt{twocolumn} -formatting. It has no effect if \texttt{preprint} formatting is chosen -instead. - -\subsubsection{\label{sec:level3}Third-level heading: Citations and Footnotes} - -Citations in text refer to entries in the Bibliography; -they use the commands \verb+\cite{#1}+ or \verb+\onlinecite{#1}+. -Because REV\TeX\ uses the \verb+natbib+ package of Patrick Daly, -its entire repertoire of commands are available in your document; -see the \verb+natbib+ documentation for further details. -The argument of \verb+\cite+ is a comma-separated list of \emph{keys}; -a key may consist of letters and numerals. - -By default, AAPM citations are numerical; \cite{feyn54} -to give a textual citation, use \verb+\onlinecite{#1}+: (Refs.~\onlinecite{witten2001,epr,Bire82}). -REV\TeX\ ``collapses'' lists of consecutive numerical citations when appropriate. -To illustrate, we cite several together \cite{feyn54,witten2001,epr,Berman1983}, -and once again (Refs.~\onlinecite{epr,feyn54,Bire82,Berman1983}). -Note that, when numerical citations are used, the references were sorted into the same order they appear in the bibliography. - -A reference within the bibliography is specified with a \verb+\bibitem{#1}+ command, -where the argument is the citation key mentioned above. -\verb+\bibitem{#1}+ commands may be crafted by hand or, preferably, -generated by using Bib\TeX. -The AAPM styles for REV\TeX~4 include Bib\TeX\ style file -\verb+aapmrev4-2.bst+, appropriate for -numbered bibliography. -REV\TeX~4 will automatically choose the style appropriate for -the document's selected class options: the default is numerical. - -This sample file demonstrates a simple use of Bib\TeX\ -via a \verb+\bibliography+ command referencing the \verb+aapmsamp.bib+ file. -Running Bib\TeX\ (in this case \texttt{bibtex -aapmsamp}) after the first pass of \LaTeX\ produces the file -\verb+aapmsamp.bbl+ which contains the automatically formatted -\verb+\bibitem+ commands (including extra markup information via -\verb+\bibinfo+ commands). If not using Bib\TeX, the -\verb+thebibiliography+ environment should be used instead. - -\paragraph{Fourth-level heading is run in.}% -Footnotes are produced using the \verb+\footnote{#1}+ command. -Numerical style citations put footnotes into the -bibliography\footnote{Automatically placing footnotes into the bibliography requires using BibTeX to compile the bibliography.}. -Note: due to the method used to place footnotes in the bibliography, \emph{you -must re-run BibTeX every time you change any of your document's -footnotes}. - -\section{Math and Equations} -Inline math may be typeset using the \verb+$+ delimiters. Bold math -symbols may be achieved using the \verb+bm+ package and the -\verb+\bm{#1}+ command it supplies. For instance, a bold $\alpha$ can -be typeset as \verb+$\bm{\alpha}$+ giving $\bm{\alpha}$. Fraktur and -Blackboard (or open face or double struck) characters should be -typeset using the \verb+\mathfrak{#1}+ and \verb+\mathbb{#1}+ commands -respectively. Both are supplied by the \texttt{amssymb} package. For -example, \verb+$\mathbb{R}$+ gives $\mathbb{R}$ and -\verb+$\mathfrak{G}$+ gives $\mathfrak{G}$ - -In \LaTeX\ there are many different ways to display equations, and a -few preferred ways are noted below. Displayed math will flush left by -default. - -Below we have numbered single-line equations, the most common kind: -\begin{eqnarray} -\chi_+(p)\alt{\bf [}2|{\bf p}|(|{\bf p}|+p_z){\bf ]}^{-1/2} -\left( -\begin{array}{c} -|{\bf p}|+p_z\\ -px+ip_y -\end{array}\right)\;, -\\ -\left\{% - \openone234567890abc123\alpha\beta\gamma\delta1234556\alpha\beta - \frac{1\sum^{a}_{b}}{A^2}% -\right\}% -\label{eq:one}. -\end{eqnarray} -Note the open one in Eq.~(\ref{eq:one}). - -Not all numbered equations will fit within a narrow column this -way. The equation number will move down automatically if it cannot fit -on the same line with a one-line equation: -\begin{equation} -\left\{ - ab12345678abc123456abcdef\alpha\beta\gamma\delta1234556\alpha\beta - \frac{1\sum^{a}_{b}}{A^2}% -\right\}. -\end{equation} - -When the \verb+\label{#1}+ command is used [cf. input for -Eq.~(\ref{eq:one})], the equation can be referred to in text without -knowing the equation number that \TeX\ will assign to it. Just -use \verb+\ref{#1}+, where \verb+#1+ is the same name that used in -the \verb+\label{#1}+ command. - -Unnumbered single-line equations can be typeset -using the \verb+\[+, \verb+\]+ format: -\[g^+g^+ \rightarrow g^+g^+g^+g^+ \dots ~,~~q^+q^+\rightarrow -q^+g^+g^+ \dots ~. \] - -\subsection{Multiline equations} - -Multiline equations are obtained by using the \verb+eqnarray+ -environment. Use the \verb+\nonumber+ command at the end of each line -to avoid assigning a number: -\begin{eqnarray} -{\cal M}=&&ig_Z^2(4E_1E_2)^{1/2}(l_i^2)^{-1} -\delta_{\sigma_1,-\sigma_2} -(g_{\sigma_2}^e)^2\chi_{-\sigma_2}(p_2)\nonumber\\ -&&\times -[\epsilon_jl_i\epsilon_i]_{\sigma_1}\chi_{\sigma_1}(p_1), -\end{eqnarray} -\begin{eqnarray} -\sum \vert M^{\text{viol}}_g \vert ^2&=&g^{2n-4}_S(Q^2)~N^{n-2} - (N^2-1)\nonumber \\ - & &\times \left( \sum_{i